Abiel Roche-Lima

  EITC E2-532
  Department of Computer Science
  University of Manitoba
  Winnipeg, Manitoba, R3T 2N2, CANADA

  Email: aroche at cs dot umanitoba dot ca
Phone: +1 204 474-8201



PUBLICATION (Most Important in the last 10 years)

Journals Papers

[1] Roche-Lima, A.; Domaratzki, M., Fristensky, B. (2014). Metabolic Network Prediction Through Pairwise Rational Kernels. BMC Bioinformatics 2014, 15:318. doi:10.1186/1471-2105-15-318. http://www.biomedcentral.com/1471-2105/15/318. (1380 visits in 3 months)

[2] Roche-Lima, A.; Domaratzki, M., Fristensky, B. (2014). Pairwise Rational Kernels Obtained by Automaton Operations. CIAA'2014. Implementation and Application of Automata Lecture Notes in Computer Science, Volume 8587, 2014, pp 332-345. http://link.springer.com/chapter/10.1007%2F978-3-319-08846-4_25

[3] Roche-Lima, A.; Domaratzki, M., Fristensky, B. (2013). Inferring Metabolic Networks Using Supervised Learning Methods Based on Sequence and Non-Sequence Kernels. Submitted to Journal of System Biology. December 2013.

[4] Alvare, G.; Roche-Lima, A.; Fristensky, B. (2012). “BioPCD - A Language for GUI Development Requiring a Minimal Skill Set”. International Journal of Computer Applications. Voulme 57. Number 6. pp 9-16.

[5] Roche-Lima, A.; Thulasiram, R.K. (2012). “Bioinformatics algorithm based on a parallel implementation on Westgrid (Cloud/Grid environment)”. Journal of Physics. J.Phys.: Conf.Ser. 341 012034. doi:10.1088/1742-6596/341/1/0102034.

[6] Roche-Lima, A.; Kakes, A., Gomez S., Noda, A., Sotolongo, A.; Vega, Y. (2005). “Comparison of the SIMPLEX and Interior Points Method to solve the linear optimization problem for nutritional rations”. Cuban Journal of Agricultural Science. 40:1. pp.1411-1415.

[7] Roche-Lima, A.; Larduet, R.; Torres V.; Mederos R.E. (2003). “Linear Programming Models to optimize animal productions”. Journal of Industrial Engineering. 2:1. pp.4-6.

Conference presentations and papers

[8] Roche-Lima, A., Domaratzki, M., Fristensky, (2013) “Supervised Learning Methods to Infer Metabolic Network using Sequence and Non-sequence Kernels. Proceedings of the Workshop: Machine Learning in System Biology. As part of the main Conference ISBM/ECCB'13. Berlin, Germany. July 19-20, 2013.

[9] Roche-Lima, A. , Domaratzki, M., Fristensky, B., Gordon, N., Alvare, G., Zhang, J. (2012) Finite-State Transducer Learning Approaches Applied to Metabolic Pathways in Bacteria. Proceedings of the European Conference of Computational Biology, ECBB12. Basel, Switzerland. September 9-12, 2012.

[10] Alvare, G.; Roche-Lima, A.; Fristensky, B. (2012). BioLegato: A Programmable, Object-Oriented Graphic User Interface. Proceedings of APBC 2012 - The Tenth Asia Pacific Bioinformatics Conference. Melbourne, Australia. January 17-19, 2012.

[11] Roche-Lima, A., Thulasiram, R.K. (2011). A Parallel Conditional Transducer Learning Algorithm Applied to Bioinformatics. (Poster presentation). Proceeding of the International Conference HPCS 2011: High Performance Computer in Medical Science. UQAM, Montreal, QC, Canada. June 15-17, 2011.

[12] Roche-Lima, A.; Oncina, J.; Grave de Peralta, R. A.; Cora Gonzalez, M. A.; Figueroa, Y.; Calderius, D. F.; Hernandez,, B; Gamboa, R. D.; Moreno, N. (2007). Bioinformatics applied to genetic study of microorganism. Proceedings of 2nd Conference of IT in Animal Science. Institute of Animal Science, Havana, Cuba. November 21-24, 2007. (Research Excellence Paper Award).

[13] Roche-Lima, A.; Oncina, J. (2007). Bioinformatics and Edit Distance Applications. Proceedings of 2nd Conference of IT in Animal Science. Institute of Animal Science, Havana, Cuba. November 21-24, 2007.

[14] Roche-Lima, A. (2005). Modelling and Simulation Applied to Animal Nutrition and Feeding. Proceedings of 1st International Conference of Tropical Animal Production. Havana, Cuba. November 24-26, 2005.

[15] Roche-Lima, A. (2004). Bioinformatics in Animal Science. Proceedings of the 1st National Conference of Bioinformatics. Havana, Cuba. February 11-13, 2004.